References

AI for Multiple Long-term Conditions Research Support Facility. 2023. “Introduction to Version Control with Git.” June 2023. https://www.youtube.com/watch?v=z9-qAGq78qE. License: CC BY 4.0. Source: https://github.com/aim-rsf/training/tree/main/version-control.

Allaire, J. J., Charles Teague, Yihui Xie, and Christophe Dervieux. 2022. “Quarto.” https://doi.org/10.5281/zenodo.5960048. License: GNU GPL v2. https://github.com/quarto-dev/quarto-web. Website: https://quarto.org/.

Amin, Abhay. 2023. “Naming Conventions for Git Branches — a Cheatsheet.” 2023. https://medium.com/@abhay.pixolo/naming-conventions-for-git-branches-a-cheatsheet-8549feca2534. License: NA. Source: NA. Website: https://medium.com/@abhay.pixolo/naming-conventions-for-git-branches-a-cheatsheet-8549feca2534.

Blischak, John D., Emily R. Davenport, and Greg Wilson. 2016. “A Quick Introduction to Version Control with Git and GitHub.” Edited by Francis Ouellette. PLOS Computational Biology 12 (1): e1004668. https://doi.org/10.1371/journal.pcbi.1004668. License: CC BY 4.0. Source: https://doi.org/10.1371/journal.pcbi.1004668.

Bryan, Jennifer. 2018. “Excuse Me, Do You Have a Moment to Talk About Version Control?” The American Statistician 72 (1): 20–27. https://doi.org/10.1080/00031305.2017.1399928. Website: https://doi.org/10.1080/00031305.2017.1399928.

Bryan, Jenny. 2023. Happy Git and GitHub for the useR. Jenny Bryan. https://happygitwithr.com. License: CC BY-NC 4.0. Source: https://github.com/jennybc/happy-git-with-r. Website: https://happygitwithr.com/.

Capes, Gerard, Bkmgit, Jacob Deppen, G. A. Devenyi, Alexander James Ball, Piper Fowler-Wright, Alessia Visconti, et al. 2023. Swcarpentry/Shell-Novice: Software Carpentry: The UNIX Shell. Zenodo. https://doi.org/10.5281/ZENODO.595899. License: CC BY 4.0. Source: https://github.com/swcarpentry/shell-novice. Website: https://swcarpentry.github.io/shell-novice/.

Chacon, Scott, and Ben Straub. 2014. Pro Git. Apress. https://doi.org/10.1007/978-1-4842-0076-6. License: CC BY-NC. Source: https://github.com/progit/progit2. Website: https://git-scm.com/book/en/v2.

coderefinery. 2023. GitHub Without the Command Line. coderefinery. https://coderefinery.github.io/github-without-command-line/. License: CC BY-NC 4.0. Source: https://github.com/coderefinery/github-without-command-line/tree/master. Website: https://coderefinery.github.io/github-without-command-line/.

GitHub. 2023. GitHub Docs. GitHub. https://docs.github.com/en. License: CC BY-NC 4.0. Source: https://docs.github.com/en.

Koziar, Katherine E., Madicken Munk, Andrew Greene, Annajiat Alim Rasel, Ed Bennett, Sarah LR Stevens, Ece Turnator, et al. 2023. Swcarpentry/Git-Novice: Software Carpentry: Version Control with Git 2023-05. Zenodo. https://doi.org/10.5281/ZENODO.7908089. License: CC BY 4.0. Source: https://github.com/swcarpentry/git-novice. Website: https://swcarpentry.github.io/git-novice/.

Lowndes, Julia Stewart, and Erin Robinson. 2022. “Openscapes Champions Lesson Series,” December. https://doi.org/10.5281/ZENODO.7407247. License: CC BY 4.0. Source: https://github.com/Openscapes/series. Website: https://openscapes.github.io/series/.

McBain, Miles. 2019. “Git for Scientists.” https://milesmcbain.github.io/git_4_sci/. License: CC BY-SA 4.0. Source: https://github.com/MilesMcBain/git_4_sci/. Website: https://milesmcbain.github.io/git_4_sci/.

Milligan, Ian, and James Baker. 2014. “Introduction to the Bash Command Line.” Edited by Adam Crymble. Programming Historian, no. 3 (September). https://doi.org/10.46430/phen0037.

Millman, K. Jarrod, Matthew Brett, Ross Barnowski, and Jean-Baptiste Poline. 2018. “Teaching Computational Reproducibility for Neuroimaging.” Frontiers in Neuroscience 12 (October). https://doi.org/10.3389/fnins.2018.00727. License: CC BY 4.0. Website: http://dx.doi.org/10.3389/fnins.2018.00727.

Perez-Riverol, Yasset, Laurent Gatto, Rui Wang, Timo Sachsenberg, Julian Uszkoreit, Felipe da Veiga Leprevost, Christian Fufezan, et al. 2016. “Ten Simple Rules for Taking Advantage of Git and GitHub.” Edited by Scott Markel. PLOS Computational Biology 12 (7): e1004947. https://doi.org/10.1371/journal.pcbi.1004947. License: CC BY 4.0. Source: https://github.com/ypriverol/github-paper. Website: https://doi.org/10.1371/journal.pcbi.1004947.

Ram, Karthik. 2013. “Git Can Facilitate Greater Reproducibility and Increased Transparency in Science.” Source Code for Biology and Medicine 8 (1). https://doi.org/10.1186/1751-0473-8-7. License: CC BY 2.0. Source: https://github.com/karthik/smb_git. Website: https://doi.org/10.1186/1751-0473-8-7.

The Turing Way Community. 2022. The Turing Way: A Handbook for Reproducible, Ethical and Collaborative Research. Zenodo. https://doi.org/10.5281/zenodo.3233853. License: CC BY 4.0. Source: https://github.com/the-turing-way/the-turing-way. Website: https://the-turing-way.netlify.app/.